Showing posts with label Reproducibility. Show all posts
Showing posts with label Reproducibility. Show all posts

Saturday, August 29, 2015

Study delivers bleak verdict on validity of psychology experiment results by Ian Sample

http://www.theguardian.com/science/2015/aug/27/study-delivers-bleak-verdict-on-validity-of-psychology-experiment-results?CMP=fb_gu

Of 100 studies published in top-ranking journals in 2008, 75% of social psychology experiments and half of cognitive studies failed the replication test

Psychology experiments are failing the replication test – for good reason

A major investigation into scores of claims made in psychology research journals has delivered a bleak verdict on the state of the science.
An international team of experts repeated 100 experiments published in top psychology journals and found that they could reproduce only 36% of original findings.
The study, which saw 270 scientists repeat experiments on five continents, was launched by psychologists in the US in response to rising concerns over the reliability of psychology research.
“There is no doubt that I would have loved for the effects to be more reproducible,” said Brian Nosek, a professor of psychology who led the study at the University of Virgina. “I am disappointed, in the sense that I think we can do better.”
“The key caution that an average reader should take away is any one study is not going to be the last word,” he added. “Science is a process of uncertainty reduction, and no one study is almost ever a definitive result on its own.”
All of the experiments the scientists repeated appeared in top ranking journals in 2008 and fell into two broad categories, namely cognitive and social psychology. Cognitive psychology is concerned with basic operations of the mind, and studies tend to look at areas such as perception, attention and memory. Social psychology looks at more social issues, such as self esteem, identity, prejudice and how people interact.
In the investigation, a whopping 75% of the social psychology experiments were not replicated, meaning that the originally reported findings vanished when other scientists repeated the experiments. Half of the cognitive psychology studies failed the same test. Details are published in the journal Science.
Even when scientists could replicate original findings, the sizes of the effects they found were on average half as big as reported first time around. That could be due to scientists leaving out data that undermined their hypotheses, and by journals accepting only the strongest claims for publication.
Despite the grim findings, Nosek said the results presented an opportunity to understand and fix the problem. “Scepticism is a core part of science and we need to embrace it. If the evidence is tentative, you should be sceptical of your evidence. We should be our own worst critics,” he told the Guardian. One initiative now underway calls for psychologists to submit their research questions and proposed methods to probe them for review before they start their experiments.
John Ioannidis, professor of health research and policy at Stanford University, said the study was impressive and that its results had been eagerly awaited by the scientific community. “Sadly, the picture it paints - a 64% failure rate even among papers published in the best journals in the field - is not very nice about the current status of psychological science in general, and for fields like social psychology it is just devastating,” he said.
But he urged people to focus on the positives. The results, he hopes, will improve research practices in psychology and across the sciences more generally, where similar problems of reproducibility have been found before. In 2005, Ioannidis published a seminal study that explained why most published research findings are false.
Marcus Munafo, a co-author on the study and professor of psychology at Bristol University, said: “I think it’s a problem across the board, because wherever people have looked, they have found similar issues.” In 2013, he published a report with Ioannidis that found serious statistical weaknesses were common in neuroscience studies.
Nosek’s study is unlikely to boost morale among psychologists, but the findings simply reflect how science works. In trying to understand how the world works, scientists must ask important questions and take risks in finding ways to try and answer them. Missteps are inevitable if scientists are not being complacent. AsAlan Kraut at the Association for Psychological Science puts it: “The only finding that will replicate 100% of the time is likely to be trite, boring and probably already known: yes, dead people can never be taught to read.”
There are many reasons why a study might not replicate. Scientists could use a slightly different method second time around, or perform the experiment under different conditions. They might fail to find the original effect by chance. None of these would negate the original finding. Another possibility is that the original result was a false positive.
Among the experiments that stood up was one that found people are equally adept at recognising pride in faces from different cultures. Another backed up a finding that revealed the brain regions activated when people were given fair offers in a financial game. One study that failed replication claimed that encouraging people to believe there was no such thing as free will made them cheat more.
Munafo said that the problem of poor reproducibility is exacerbated by the way modern science works. “If I want to get promoted or get a grant, I need to be writing lots of papers. But writing lots of papers and doing lots of small experiments isn’t the way to get one really robust right answer,” he said. “What it takes to be a successful academic is not necessarily that well aligned with what it takes to be a good scientist.”

Wednesday, October 30, 2013

You can’t read just one: Reproducibility and multiple sources By Bonnie Swoger

http://blogs.scientificamerican.com/information-culture/2013/10/29/you-cant-read-just-one-reproducibility-and-multiple-sources/

There are lots of ways to mess with the heads of undergraduate students. Giving them a research assignment and failing to specify a minimum number of references needed is just one example.
“Include as many sources as you need to make your point and illustrate your thesis.”
For students, finding one scholarly article on their topic often seems to be enough. Researchers did an experiment, got some results, and answered the research question the student started with. All done, all set, time for dinner.
But science doesn’t work that way. One experiment may suggest something interesting, but it doesn’t prove anything. In fact, it is quite easy to point to many examples of intriguing scientific studies that were either proved false or that couldn’t be reproduced later on. Scientific ideas that are true should be reproducible: other researchers should be able to repeat the experiments and get similar results or use other methods to arrive at the same conclusions. You can’t say that you discovered something new if someone else can’t reproduce your result.

This fundamental scientific idea, reproducibility, may be in crisis. A recent article by Vasilevsky et al. in the journal PeerJ suggested that many scientific journal articles don’t provide the information that other scientists would need in order to replicate their results. Key information about chemicals, reactants or model organisms is often missing, despite journal requirements to include such information (Vasilevsky et al., 2013). And a recent item in The Economist suggests that this might not matter that much. The emphasis placed on new research (by funding agencies and tenure and promotion committees) means that few scientists even attempt to replicate the work of others (“Unreliable research: Trouble at the lab,” 2013).

All of this means trouble from the very beginning of a research project, before an experiment is even designed, when scientists start to do background research on their topics. In the same way that experimental scientists can’t rely on the results of just one experiment to prove something, relying on just one information source for knowledge is a sure way to end up with unreliable information. Journalists look for corroborating sources, wikipedia flags articles that need a wider variety of citations, and scholars need to find multiple scholarly articles to support their ideas.

Some innovative people, companies and publishers are trying to sort this mess out. A collaboration between PLOS ONE, Mendeley, Figshare and the Science Exchange will be attempting to replicate the results of selected projects as a part of the Reproducibility Initiative. The Reproducibility Project is a crowdsourced effort to evaluate the reproducibility of experimental results in psychology. And the Reproducible Science project aims to make the results of computational experiments reproducible by ensuring the sharing of code and data and by making that information available to reviewers who can test the results described in a manuscript they are reviewing.
Unfortunately, these innovative programs are just a drop in the bucket of modern science. Funding agencies, publishers and tenure and promotion committees still value original work more highly than verification work. Scientists who concentrated on replicating the work of others would risk their careers.
As a result it is important for students and scholars to be aware of the challenges facing the reproducibility of science. We teach students in introductory science classes that reproducibility is one of the hallmarks of science. As they learn more about their disciplines, they need to be aware of the practical challenges involved in reproducing the work of others, and the importance of finding multiple sources about a topic needs to be emphasized.

As a librarian, part of my job is to help students find additional sources related to their research topics, even if there isn’t a published reproduction of an original source. This isn’t about which database to use or whether to put quotes around a phrase. It is about getting them to think critically about their topics. For example, while there might not be a second study that repeated the experiment of the first, students can look for:
  • Studies that examined the same topic in a different way
  • Studies that used the same methodology on a different species, geographic area, etc.
  • Background studies on individual aspects of their research question, including the statistical analyses used
  • Studies that cite the original study (even if no one has tried to reproduce the results, other scholars might express doubts about their conclusions when they cite the original).
The issues surrounding reproducibility in science won’t be solved overnight, and it will take a concerted effort from scientists at all levels of the modern scientific enterprise to steer this very big ship. In the meantime, students and scholars can make special efforts to ensure that they are using the highest quality information available as the basis of their original studies.

Works Cited:
Unreliable research: Trouble at the lab.” (2013, October 19). The Economist, 409(8858), 26-30.
Vasilevsky, N. a, Brush, M. H., Paddock, H., Ponting, L., Tripathy, S. J., Larocca, G. M., & Haendel, M. A. (2013). On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ, 1, e148. doi:10.7717/peerj.148.